Search / io.github.pipeworx-io/pubmed
Pubmed
R0· no sign-inPubMed MCP — wraps the NCBI E-utilities API (biomedical literature, free, no auth)
v1.1.4 · active · repository · website · descriptor JSON · versions
Search / io.github.pipeworx-io/pubmed
R0· no sign-inPubMed MCP — wraps the NCBI E-utilities API (biomedical literature, free, no auth)
v1.1.4 · active · repository · website · descriptor JSON · versions
{
"mcpServers": {
"pubmed": {
"type": "http",
"url": "https://gateway.pipeworx.io/pubmed/mcp"
}
}
}claude mcp add --transport http pubmed https://gateway.pipeworx.io/pubmed/mcp[mcp_servers.pubmed]
url = "https://gateway.pipeworx.io/pubmed/mcp"
{
"$schema": "https://opencode.ai/config.json",
"mcp": {
"pubmed": {
"type": "remote",
"url": "https://gateway.pipeworx.io/pubmed/mcp",
"enabled": true
}
}
}{
"mcpServers": {
"pubmed": {
"type": "http",
"url": "https://gateway.pipeworx.io/pubmed/mcp"
}
},
"deeplink": "cursor://anysphere.cursor-deeplink/mcp/install?name=pubmed&config=eyJ0eXBlIjoiaHR0cCIsInVybCI6Imh0dHBzOi8vZ2F0ZXdheS5waXBld29yeC5pby9wdWJtZWQvbWNwIn0%3D"
}{
"servers": {
"pubmed": {
"type": "http",
"url": "https://gateway.pipeworx.io/pubmed/mcp"
}
}
}{
"mcpServers": {
"pubmed": {
"httpUrl": "https://gateway.pipeworx.io/pubmed/mcp"
}
}
}extensions:
"pubmed":
enabled: true
name: "pubmed"
type: streamable_http
uri: "https://gateway.pipeworx.io/pubmed/mcp"
timeout: 300
Not scored: fewer than three checks apply, usually because no remote answered a credential-free probe or the server is a local package.
protocol.modernnewest supported version is 2025-03-26; 2026-07-28 not supported, older versions are deprecated until 2027-07-28protocol.statelessonly applies to 2026-07-28 serversprotocol.transportstreamable HTTPprotocol.list_ttlonly applies to 2026-07-28 serversauth.prm, auth.as_metadata, auth.cimdno remote uses OAuthauth.secret_in_urlno templated URLtools.descriptions, tools.description_length, tools.schemas, tools.annotations, tools.directory_hints, tools.token_cost, tools.api_dumptool list unknown (behind auth, not probed, or empty)stability.changes, stability.rug_pulltool list unknowndeps.known_vulns, deps.mcp_sdk_version, deps.resolvableno npm or PyPI packageai_visibility_checkremovedProbe one or more LLMs for what they know about a business / brand / product / topic and score visibility (0-100) per model. Default model is Workers AI Llama-3.3-70b (free); pass `_apiKey` to also probe Anthropic (BYO key — you pay Anthropic directly for those calls). Returns per-model {score, confidence, signals, raw_response} + a combined view. Useful for AI-marketing audits, pre-launch brand checks, competitive monitoring.
resolution_auditremovedExtract the settlement clause of a single Polymarket or Kalshi market: who publishes the settling number (source), the clock time + timezone it is taken at, the precision of the computation (e.g. "1-minute candle close" vs "60-second trailing average" vs "election outcome"), the evidence standard (official_source | consensus_reporting | any_credible_report | unspecified), and void_handling (cancellation/postponement settlement — reused verbatim from bet_research's cancellation_rule detector, not re-derived). Parses Polymarket's `description` field (fetched via polymarket_market) or Kalshi's `rules_primary` + `rules_secondary` fields (fetched via kalshi_market) with regex + a small vocabulary — no LLM pass, so an unusual clause reports confidence:"low" rather than a guess. Pass `market` as a Polymarket slug/URL or a Kalshi market ticker (e.g. "KXBTCD-26SEP1317-T66999.99"); a Kalshi EVENT ticker (e.g. "KXBTCD-26SEP1317") also works — it picks one representative market under that event, since the settlement mechanism is normally shared across all strikes/legs in one event. Use this before treating a polymarket_kalshi_spread row as a real arbitrage: two ladders that look alike can settle on different sources, at different times, with different precision — this tool is how you check. Pair with resolution_diff to compare two markets directly. KNOWN GAP: idiosyncratic phrasing that doesn't match the vocabulary returns confidence:"low" and evidence_standard:"unspecified" rather than an LLM-guessed answer.
compare_entitiesremoved"Compare X and Y" / "X vs Y" / "X versus Y" / "which is bigger / better / larger / more profitable" / "rank these companies" / "head to head" — side-by-side comparison of 2–5 companies or drugs in ONE parallel call. ALWAYS PREFER over sequential single-pack lookups when comparing entities. type="company" pulls LATEST 10-K revenue + net income + cash + long-term debt from SEC EDGAR/XBRL (off-calendar fiscal years handled correctly — AAPL Sep, NVDA Jan, etc.). type="drug" pulls FAERS adverse-event counts, FDA approval counts, active trial counts. Results sorted by primary metric so "largest" / "most" / "biggest" reads off the top of the response. Returns paired data + pipeworx:// citation URIs per entity. Replaces 8–15 sequential lookups.
scan_competitor_ai_presenceremovedCompare AI visibility across multiple entities side-by-side. Probes each entity (your brand + N competitors) with ai_visibility_check, ranks by score, surfaces which is most/least recognized. Useful for competitive AI-marketing audits: "does Claude know about us as well as our competitors?". Returns ranked list with score, confidence, signal density per entity.
recallremovedRetrieve a value previously saved via remember, or list all saved keys (omit the key argument). Use to look up context the agent stored earlier — the user's target ticker, an address, prior research notes — without re-deriving it from scratch. Scoped to your identifier (anonymous IP, BYO key hash, or account ID). Pair with remember to save, forget to delete.
release_calendar_marketsremovedJOIN of the official release calendar (econ data, the FOMC, FDA decisions, SEC rules) against LIVE Polymarket/Kalshi markets — which scheduled releases land in the next N hours, and which live markets resolve on them. This is a POSITIONING tool, not a speed product: results are cached like every other pack (≤ 60s TTL) and there is no push/webhook — do not use this to try to beat a release, use it to see what is coming and what is already priced. CATEGORIES: econ (CPI, Employment Situation/jobs report, GDP, PCE, PPI, retail sales, housing starts, jobless claims — via fred_release_dates per known release_id, since FRED's own cross-release calendar mostly returns recent actuals, not future dates), fed (the next FOMC meeting's rate decision, via fomc_calendar), fda (PDUFA action dates + FDA advisory-committee meetings, via pdufa_catalysts / fda_adcom_calendar), sec (SEC final rules whose own DATES clause names an effective date in the window, via federal-register recent_rules — usually finds nothing in a short window since SEC rules typically take effect 30–60 days out, which is an accurate answer, not a bug), court (ALWAYS EMPTY today — court-listener has no forward-looking scheduled-hearing calendar, only filing/termination dates, so this category returns zero releases with unsupported:true rather than fabricate one). Omit `categories` or pass "all" for every category. MATCHING AND ITS HONESTY CONTRACT: every release is returned even when it has ZERO matched markets — a release is never dropped just because nothing on Polymarket or Kalshi resolves on it (most FDA/SEC releases will show markets:[]; that is signal, not a gap). Every matched market carries resolves_on_this_release: "true" (the venue's own close/end date sits within ~36h of the release AND the question passed a subject filter — econ and fed only), "likely" (same subject filter, but the venue closes days away from the release date), or "unclear" (a keyword hit with no date to anchor against — always true for the fda category, which has no ladder structure to check a date against). matched_by names the mechanism (a Kalshi series ticker, a Polymarket search query, or an FDA keyword probe) so a caller can judge the match rather than trust a label. scheduled_at carries both `utc` and `et`; econ releases use the standing BLS/Census 8:30am ET convention (FRED's calendar itself has no clock time), FOMC decisions use the 2:00pm ET convention, and FDA/SEC dates are date_only:true (no reliable clock time exists for either). DO NOT treat a matched market as a real arbitrage or a settled fact on its own — a market question sharing tokens with a release name is not proof it settles on that release's own published number. Call resolution_audit / resolution_diff (fleet #1909) on a specific market before sizing anything here. An empty window (zero releases across every requested category) returns the SAME shape as a populated one — release_count:0, releases:[] — plus empty_reason:"no_releases_in_window" and a `hint` telling you to widen, so you never branch on the response shape and never have to guess whether zero means "nothing is scheduled" or "the lookup failed". Econ releases especially cluster on specific dates each month, so a 48h window often straddles a dead stretch.
kalshi_weather_edgeremovedPrices Kalshi daily high-temperature markets against the NWS forecast for the market's OWN settlement station, and measures whether that forecast actually beats the market. Two modes. LIVE (default): returns the full strike ladder for one city and settlement date with market_prob (mid), forecast_prob, and edge_pp per strike, plus the settlement clause verbatim. BACKTEST (`backtest_days: N`): scores an archived gridded forecast against the market on settled days and returns brier_market vs brier_forecast with a plain-English `verdict`, so the edge is MEASURED rather than asserted. READ THE WARNINGS — they are not boilerplate. (1) These markets DO NOT settle on the NWS. They settle on The Weather Company (weather.com) at a Kalshi station code such as CLINYC, which the response quotes verbatim; so part of every edge_pp is NWS-vs-Weather-Company disagreement about the same day at the same station, which is not mispricing and not tradeable. `settlement_vs_forecast_basis_f` from backtest mode is that part as a number. (2) The station is DERIVED from the settlement clause, never from the city name: Chicago settles at MIDWAY and New York at CENTRAL PARK, so a city-centre forecast would misprice a whole ladder. A station that cannot be resolved yields rows with no forecast and a reason, never a guessed coordinate. (3) forecast_prob assumes a normal distribution around the NWS high whose width is ASSUMED, not fitted (stated in `distribution_assumption`) — run backtest mode to see whether it is calibrated. (4) edge_pp is gross: no Kalshi fees, no bid-ask. MEASURED RESULT, AND IT IS NOT THE FLATTERING ONE: on the first backtest (KXHIGHNY, 13 settled days to 2026-09-11, 58 market observations) the MARKET beat the forecast — Brier 0.1008 for the market against 0.1594 for the archived gridded forecast, lower being better. So on that sample there is NO forecast edge to sell, and a large edge_pp is more likely to be the model disagreeing with a better-informed market than an opportunity. The measured settlement-vs-forecast basis was 1.7F mean absolute over 8 pinnable days, slightly warm-biased, which is a big share of a typical edge_pp on a 2-degree bracket. Re-run backtest_days before believing any edge; if a later sample reverses this, the numbers say so. NWS is US-only, so the ~30 international Kalshi weather series (London, Paris, Tokyo) return market prices with forecast_unavailable rather than a forecast. Precipitation series are listed but not yet priced. Cities: nyc, chicago, los angeles, miami, austin, houston, denver, philadelphia — or pass `series_ticker` for any other (e.g. "KXHIGHTBOS").
company_factsremovedTYPED, DETERMINISTIC financial facts for a US public company for an EXPLICITLY NAMED reporting period — "Apple revenue for fiscal 2023", "Walmart net income FY2026 Q3", "Microsoft cash at the end of fiscal 2024". PREFER OVER entity_profile / get_company_financials whenever the period matters: those answer "the most recent figures" and will happily hand back FY2025 when you asked about FY2019, and neither separates a discrete quarter from a year-to-date figure. This one refuses instead — it NEVER substitutes the latest period for the period requested, NEVER returns 0 for missing data, NEVER lets a 9-month YTD number answer a quarterly question, and NEVER converts a currency. Every answer carries the exact us-gaap concept it came from, what that concept MEASURES (NetIncomeLoss excludes non-controlling interests, ProfitLoss includes them — not synonyms), the accession number and a link to the filing on sec.gov, the restatement trail of any superseded figures, and a contract + derivation version to pin against. Fiscal periods are the FILER'S OWN, anchored on their fiscal-year end, so Walmart's year ending 2026-01-31 is FY2026 and Apple's ending 2025-09-27 is FY2025. Attributes in v1: revenue, net_income, cash. Every non-answer is a named status — `unavailable` (the filer did not report it for that period; the periods that DO exist are listed, without values), `unsupported` (outside what v1 covers — a non-us-gaap filer, an unknown attribute, a non-USD unit), `ambiguous` (the company name matched two filers equally well; both are named), `conflicting` (two filings the same day disagree; both are returned and neither is picked), `partial` (a value with no accession behind it). Source: SEC EDGAR, XBRL financial facts, one publisher read once — see `corroboration`. Same response is served at POST https://gateway.pipeworx.io/v1/facts for non-MCP callers.
recent_alertsremovedPull fired events from your subscription feed. Returns the most recent alerts the evaluator has written to your persisted feed — each carries source, citation_uri (pipeworx:// when available), and the raw event payload. Filter by type (e.g. "sec_8k") and/or since (ISO timestamp). Set mark_read:true to flag returned events read so the next call only shows newer ones. Polls work fine; the same feed is also at GET registry.pipeworx.io/alerts.json for scripts and dashboards.
entity_profileremoved"Tell me about X" / "research Acme" / "brief me on Tesla" / "what does Apple do" / "company profile for Microsoft" / "give me the rundown on NVDA" / "everything you know about $TICKER" — full cross-source profile of a US public company in ONE parallel call. ALWAYS PREFER over chaining single-pack SEC/XBRL/news lookups when the user asks for a holistic view. Fans out across SEC EDGAR, XBRL, USPTO patents, federal contracts (USAspending), FDA-licensed biologics (Purple Book), H-1B hiring (DOL LCA), news and GLEIF, and returns: cik + company_name (+ resolved_from/resolved_to when `value` was a name); recent_filings (up to 5 with pipeworx://edgar/company/{cik}/filings/{accession} URIs); fundamentals (LATEST 10-K Revenues + NetIncomeLoss + Cash, sorted period_end DESC); patents (USPTO PatentsView API sunset May 2025 — soft-fails until reactivated); federal_contracts (USAspending awards where the company is the recipient); fda_products (FDA-licensed biologics — vaccines, cell/gene therapies — from the Purple Book; a company with only small-molecule/generic drugs will show none here, that is expected, not a failure); hiring (H-1B sponsorship volume + salary range from DOL LCA filings); recent news mentions via GDELT→GNews fallback; LEI via GLEIF. `sources_used` / `sources_failed` say which of these actually returned data for THIS company — an empty section is a real "no data", not a bug. `sources_skipped` is the third state: a leg we deliberately did NOT run, each entry carrying a `reason` token and a plain-English `detail` (the Purple Book is skipped for a filer SEC classifies outside the life-science SIC bands, since it lists only 351(a)/(k) biologics licence holders). Pass a ticker ("AAPL"), zero-padded CIK ("0000320193"), OR a company name ("Moderna") — names now resolve via SEC EDGAR's company-name match; a private company (no CIK/ticker) returns resolved:false with an explicit `notes` line, not a bare failure. `type` accepts "company" or "ticker" interchangeably — both take the same `value` shapes above.
Showing the latest 10. Full history: list_changes · trend: quality JSON.
Checks run on what our credential-free, read-only probes observe; tools are never called and no code audit is performed. How it is computed.
+repository +namespace-matches-repo +website +reachable +uptime-99% +updated-10d-ago
Derived from observable signals (official registry feed and our own credential-free probes); no code audit performed. How it is computed.
| remote | auth | reachable | uptime 30d | p50 | protocol | last ok |
|---|---|---|---|---|---|---|
https://gateway.pipeworx.io/pubmed/mcp streamable-http | none | yes | 99% | 29 ms | 2025-03-26 | 2026-10-19 |
No tools observed. Tools appear once a credential-free probe can list them.
Schemas: list_tools.
And 1,847 more from this publisher.
{
"name": "io.github.pipeworx-io/pubmed",
"title": "Pubmed",
"$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
"remotes": [
{
"url": "https://gateway.pipeworx.io/pubmed/mcp",
"type": "streamable-http"
}
],
"version": "1.1.4",
"repository": {
"url": "https://github.com/pipeworx-io/mcp-pubmed",
"source": "github"
},
"websiteUrl": "https://pipeworx.io/packs/pubmed",
"description": "PubMed MCP — wraps the NCBI E-utilities API (biomedical literature, free, no auth)"
}