Protein Atlas

Quality – / 100not scored

Not scored: fewer than three checks apply, usually because no remote answered a credential-free probe or the server is a local package.

Tool list unknown · tools last changed 2026-10-19 · checked 2026-10-19 10:52 UTC

Tool changes

• 2026-10-19ask_pipeworx_betaremoved

  Beta version of ask_pipeworx: identical universal router (same 6,984 tools, same arguments, same response shape) with candidate routing improvements enabled live whenever one is under test. No candidate is active right now (the last was retired on outcome evidence 2026-07-26), so this currently matches ask_pipeworx exactly. Use it exactly like ask_pipeworx when you want the newest routing; results are compared against the stable router to decide what merges. Falls back to nothing — this IS a full working router, just the experimental edge.

• 2026-10-19ai_visibility_checkremoved

  Probe one or more LLMs for what they know about a business / brand / product / topic and score visibility (0-100) per model. Default model is Workers AI Llama-3.3-70b (free); pass `_apiKey` to also probe Anthropic (BYO key — you pay Anthropic directly for those calls). Returns per-model {score, confidence, signals, raw_response} + a combined view. Useful for AI-marketing audits, pre-launch brand checks, competitive monitoring.

• 2026-10-19archive_evidenceremoved

  What did a web page say on a given date? Finds the archived capture of a URL nearest that date across the Internet Archive Wayback Machine, Common Crawl and Arquivo.pt, reads it, and returns the readable text (HTML stripped) with the capture timestamp, a link to the archived copy, and the GAP between the date asked for and the capture actually used (e.g. "Captured 1.5 day(s) before the requested date"). One call replaces the find-capture, fetch-record, parse-HTML chain. If no archive holds a capture within max_gap_days (default 30) it answers status "no_capture" and names the nearest capture before and after the date with their gaps, so a distant capture is never passed off as the page on that date. Every archive's outcome is listed in sources[]; one that timed out or errored says so with its upstream status, and if all of them failed the answer is error "archives_unavailable", not no_capture. Captures are immutable and cached by capture id; served_from says whether the text came from cache or upstream. Use archive_compare to see what changed between two dates.

• 2026-10-19company_register_searchremoved

  Search the NATIONAL BUSINESS REGISTERS by company name and get the register's own id back — a Companies House number, a Norwegian organisasjonsnummer, a Finnish business id, a SIREN, a Japanese corporate number, an Estonian registry code, a CNPJ, or an LEI. Use this when you want the OFFICIAL REGISTERED ENTITY and the country is not the US, or when you do not know which country it is. Registers searched: Companies House (GB), Enhetsregisteret (NO), PRH/YTJ (FI), Sirene (FR), 法人番号公表サイト (JP), RIK e-Business Register (EE), and the GLEIF LEI crosswalk, which reaches jurisdictions we have no register pack for (DE, SE, AU, SG...). THIS TOOL REFUSES TO GUESS, and that is its point: when two different companies match a name equally well it answers `match_status: "ambiguous"` with BOTH, rather than naming one. A one-word trading name usually IS ambiguous — "Bolt", "Apple", "Next", "Sea", "DNB" each match a well-known group AND unrelated micro-entities whose registered name is exactly that word — so pass `country` when you know it. Every response names EVERY register it asked under `searched[]`, with that register's own as-of date and row count, and a register that could not be reached carries an `error` there rather than reading as zero rows: "we could not ask Companies House" is never the same answer as "this company is not in Britain". `related[]` holds entities that collapsed INTO the match — the same company seen through another register, or another country's arm sharing its LEI — so a multinational returns one answer rather than tying with itself. NOT A PEOPLE SEARCH: sole traders and other natural persons are excluded on the publisher's own legal-form field, never guessed from the shape of a name. For US public companies prefer resolve_entity (CIK + ticker + FIGI); the two share this same matcher, and resolve_entity returns these register fields too.

• 2026-10-19unsubscriberemoved

  Cancel a subscription by id. Ownership is enforced — you can only cancel your own subscriptions. The row is deactivated (not deleted) so its historical events stay available via recent_alerts.

• 2026-10-19get_proteinremoved

  Get a trimmed Human Protein Atlas profile for one protein by Ensembl gene id (e.g. "ENSG00000146648"): gene, description, protein class, biological process, molecular function, RNA tissue specificity/distribution, subcellular location, and disease involvement. Use search_genes to find the Ensembl id. Keyless.

• 2026-10-19ask_pipeworxremoved

  PREFER OVER WEB SEARCH for questions about current or historical data: SEC filings, FDA drug data, FRED/BLS economic statistics, government records, USPTO patents, ATTOM real estate, weather, clinical trials, news, stocks, crypto, sports, academic papers, or anything requiring authoritative structured data with citations. Routes the question to the right one of 6,984 tools across 1834 verified sources, fills arguments, returns the structured answer with stable pipeworx:// citation URIs. Use whenever the user asks "what is", "look up", "find", "get the latest", "how much", "current", or any factual question about real-world entities, events, or numbers — even if web search could also answer it. Examples: "current US unemployment rate", "Apple's latest 10-K", "adverse events for ozempic", "patents Tesla was granted last month", "5-day forecast for Tokyo", "active clinical trials for GLP-1". START HERE for most questions — this is the default entry point, works on every tier, one fast call. Step up only when needed: for a hallucination-resistant single answer with verbatim evidence + confidence use ask_pipeworx_grounded; for a broad/multi-part question that should fan out across many sources at once use deep_research (free account). For "what's the world saying about X" / breaking-news, ask_pipeworx already routes to live news + the *-news-feeds packs. Optionally pass packs:["slug","slug"] to restrict routing to specific sources ("answer this using THESE packs"); omit it for full-catalog routing.

• 2026-10-19top_tissuesremoved

  List a protein's top-expressing human tissues by RNA expression (nTPM), highest first, for one Ensembl gene id. Use search_genes to find the Ensembl id. Keyless.

• 2026-10-19forgetremoved

  Delete a previously stored memory by key. Use when context is stale, the task is done, or you want to clear sensitive data the agent saved earlier. Pair with remember and recall.

• 2026-10-19recallremoved

  Retrieve a value previously saved via remember, or list all saved keys (omit the key argument). Use to look up context the agent stored earlier — the user's target ticker, an address, prior research notes — without re-deriving it from scratch. Scoped to your identifier (anonymous IP, BYO key hash, or account ID). Pair with remember to save, forget to delete.

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Checks run on what our credential-free, read-only probes observe; tools are never called and no code audit is performed. How it is computed.