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Gnomad

R0· no sign-in

gnomAD MCP — Broad Institute Genome Aggregation Database (GraphQL).

v0.1.2 · active · repository · website · descriptor JSON · versions

An agent can connect right now, no human step.Remote endpoint, no authentication, reachable on the last probe.
Quality–not scored
Trust97of 100
Uptime, 30 days98%
Latency p5031 ms

Connect

8 clients · secrets stay placeholders
{
  "mcpServers": {
    "gnomad": {
      "type": "http",
      "url": "https://gateway.pipeworx.io/gnomad/mcp"
    }
  }
}
claude mcp add --transport http gnomad https://gateway.pipeworx.io/gnomad/mcp
[mcp_servers.gnomad]
url = "https://gateway.pipeworx.io/gnomad/mcp"
{
  "$schema": "https://opencode.ai/config.json",
  "mcp": {
    "gnomad": {
      "type": "remote",
      "url": "https://gateway.pipeworx.io/gnomad/mcp",
      "enabled": true
    }
  }
}
{
  "mcpServers": {
    "gnomad": {
      "type": "http",
      "url": "https://gateway.pipeworx.io/gnomad/mcp"
    }
  },
  "deeplink": "cursor://anysphere.cursor-deeplink/mcp/install?name=gnomad&config=eyJ0eXBlIjoiaHR0cCIsInVybCI6Imh0dHBzOi8vZ2F0ZXdheS5waXBld29yeC5pby9nbm9tYWQvbWNwIn0%3D"
}
{
  "servers": {
    "gnomad": {
      "type": "http",
      "url": "https://gateway.pipeworx.io/gnomad/mcp"
    }
  }
}
{
  "mcpServers": {
    "gnomad": {
      "httpUrl": "https://gateway.pipeworx.io/gnomad/mcp"
    }
  }
}
extensions:
  "gnomad":
    enabled: true
    name: "gnomad"
    type: streamable_http
    uri: "https://gateway.pipeworx.io/gnomad/mcp"
    timeout: 300

Quality – / 100not scored

Not scored: fewer than three checks apply, usually because no remote answered a credential-free probe or the server is a local package.

protocol75 · weight 25
  • warn
    protocol.modernnewest supported version is 2025-03-26; 2026-07-28 not supported, older versions are deprecated until 2027-07-28
  • n/a
    protocol.statelessonly applies to 2026-07-28 servers
  • pass
    protocol.transportstreamable HTTP
  • n/a
    protocol.list_ttlonly applies to 2026-07-28 servers
authorizationn/a · weight 15
  • n/a
    auth.prm, auth.as_metadata, auth.cimdno remote uses OAuth
  • n/a
    auth.secret_in_urlno templated URL
tool hygienen/a · weight 30
  • n/a
    tools.descriptions, tools.description_length, tools.schemas, tools.annotations, tools.directory_hints, tools.token_cost, tools.api_dumptool list unknown (behind auth, not probed, or empty)
stabilityn/a · weight 15
  • n/a
    stability.changes, stability.rug_pulltool list unknown
dependenciesn/a · weight 15
  • n/a
    deps.known_vulns, deps.mcp_sdk_version, deps.resolvableno npm or PyPI package

Tool list unknown · tools last changed 2026-09-27 · checked 2026-10-19 21:10 UTC

Tool changes

  • searchremoved

    Autocomplete-style search across gnomAD genes and variants by free-text query; returns matching Ensembl gene IDs with symbols, and matching variant IDs (an rsid resolves here). Use to resolve a partial gene name, symbol or rsid before calling gene or variant.

  • transcriptremoved

    Fetch gnomAD variant data for an Ensembl transcript (ENST…), returning transcript coordinates, gene symbol, chromosome position, and per-variant allele counts (ac/an) from exome and genome datasets.

  • regionremoved

    Variants in a genomic region (≤25kb recommended). You MUST say which genome build your start/stop are in via assembly — there is no default, because a position is valid in both builds and a wrong guess returns real variants from the wrong locus rather than an error.

  • generemoved

    Gene info + variants. Accepts gene symbol (e.g. "BRCA1") or Ensembl gene id.

  • variantremoved

    Variant by chr-pos-ref-alt (e.g. "1-55051215-G-A") or rsid (e.g. "rs1801133"). Coordinates must match the dataset's genome build: the default gnomad_r4 is GRCh38, so a GRCh37/hg19 position will not be found — pass dataset "gnomad_r2_1" for GRCh37.

  • forgetremoved

    Delete a previously stored memory by key. Use when context is stale, the task is done, or you want to clear sensitive data the agent saved earlier. Pair with remember and recall.

  • recallremoved

    Retrieve a value previously saved via remember, or list all saved keys (omit the key argument). Use to look up context the agent stored earlier — the user's target ticker, an address, prior research notes — without re-deriving it from scratch. Scoped to your identifier (anonymous IP, BYO key hash, or account ID). Pair with remember to save, forget to delete.

  • rememberremoved

    Save data the agent will need to reuse later — across this conversation or across sessions. Use when you discover something worth carrying forward (a resolved ticker, a target address, a user preference, a research subject) so you don't have to look it up again. Stored as a key-value pair scoped by your identifier. Authenticated users get persistent memory; anonymous sessions retain memory for 24 hours. Pair with recall to retrieve later, forget to delete.

  • pipeworx_feedbackremoved

    Tell the Pipeworx team something is broken, missing, or needs to exist. Use when a tool returns wrong/stale data (bug), when a tool you wish existed isn't in the catalog (feature/data_gap), or when something worked surprisingly well (praise). ONLY for tools served by this Pipeworx connection — if the tool came from a different MCP server in your client (another vendor's Gmail, Splunk, Slack, etc. connector), we cannot fix it and reporting it here only delays you; file it with that server instead. Not sure? Pipeworx tool names are the ones this connection lists. Describe the issue in terms of Pipeworx tools/packs — don't paste the end-user's prompt. Filing without an account returns a `claim_token`; pass it back later as pipeworx_feedback({claim_token:"pwfb_…"}) to read whether it was fixed and what changed. The team reads digests daily and signal directly affects roadmap. Rate-limited to 5 per identifier per day. Free; doesn't count against your tool-call quota.

  • scan_competitor_ai_presenceremoved

    Compare AI visibility across multiple entities side-by-side. Probes each entity (your brand + N competitors) with ai_visibility_check, ranks by score, surfaces which is most/least recognized. Useful for competitive AI-marketing audits: "does Claude know about us as well as our competitors?". Returns ranked list with score, confidence, signal density per entity.

Showing the latest 10. Full history: list_changes · trend: quality JSON.

Checks run on what our credential-free, read-only probes observe; tools are never called and no code audit is performed. How it is computed.

Trust 97 / 100

provenance90
liveness99
freshness100
hygiene100

+repository +namespace-matches-repo +website +reachable +uptime-98% +updated-23d-ago

Derived from observable signals (official registry feed and our own credential-free probes); no code audit performed. How it is computed.

Endpoints

remoteauthreachableuptime 30dp50protocollast ok
https://gateway.pipeworx.io/gnomad/mcp streamable-httpnoneyes98%31 ms2025-03-262026-10-19

Tools (0)

No tools observed. Tools appear once a credential-free probe can list them.

Schemas: list_tools.

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Official server.json
{
  "name": "io.github.pipeworx-io/gnomad",
  "title": "Gnomad",
  "$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
  "remotes": [
    {
      "url": "https://gateway.pipeworx.io/gnomad/mcp",
      "type": "streamable-http"
    }
  ],
  "version": "0.1.2",
  "repository": {
    "url": "https://github.com/pipeworx-io/mcp-gnomad",
    "source": "github"
  },
  "websiteUrl": "https://pipeworx.io/packs/gnomad",
  "description": "gnomAD MCP — Broad Institute Genome Aggregation Database (GraphQL)."
}