Search / io.github.gucci10248/biomcp
BioMCP
L0· runs locally50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more
v0.8.22 · active · repository · website · descriptor JSON · versions
Search / io.github.gucci10248/biomcp
L0· runs locally50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more
v0.8.22 · active · repository · website · descriptor JSON · versions
{
"mcpServers": {
"biomcp": {
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"docker.io/jackgucci/biomcp:0.8.22"
]
}
}
}claude mcp add biomcp -- docker run -i --rm docker.io/jackgucci/biomcp:0.8.22[mcp_servers.biomcp]
command = "docker"
args = ["run", "-i", "--rm", "docker.io/jackgucci/biomcp:0.8.22"]
{
"$schema": "https://opencode.ai/config.json",
"mcp": {
"biomcp": {
"type": "local",
"command": [
"docker",
"run",
"-i",
"--rm",
"docker.io/jackgucci/biomcp:0.8.22"
],
"enabled": true
}
}
}{
"mcpServers": {
"biomcp": {
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"docker.io/jackgucci/biomcp:0.8.22"
]
}
},
"deeplink": "cursor://anysphere.cursor-deeplink/mcp/install?name=biomcp&config=eyJjb21tYW5kIjoiZG9ja2VyIiwiYXJncyI6WyJydW4iLCItaSIsIi0tcm0iLCJkb2NrZXIuaW8vamFja2d1Y2NpL2Jpb21jcDowLjguMjIiXX0%3D"
}{
"servers": {
"biomcp": {
"type": "stdio",
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"docker.io/jackgucci/biomcp:0.8.22"
]
}
}
}{
"mcpServers": {
"biomcp": {
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"docker.io/jackgucci/biomcp:0.8.22"
]
}
}
}extensions:
"biomcp":
enabled: true
name: "biomcp"
type: stdio
cmd: "docker"
args:
- "run"
- "-i"
- "--rm"
- "docker.io/jackgucci/biomcp:0.8.22"
timeout: 300
This is a local package: the command runs on your machine.
Not scored: fewer than three checks apply, usually because no remote answered a credential-free probe or the server is a local package.
protocol.modern, protocol.stateless, protocol.transport, protocol.list_ttlno remote answered a protocol handshake (not probed yet, unreachable, or local-only)auth.prm, auth.as_metadata, auth.cimdno remote uses OAuthauth.secret_in_urlno templated URLtools.descriptions, tools.description_length, tools.schemas, tools.annotations, tools.directory_hints, tools.token_cost, tools.api_dumptool list unknown (behind auth, not probed, or empty)stability.changes, stability.rug_pulltool list unknowndeps.known_vulns, deps.mcp_sdk_version, deps.resolvableno npm or PyPI packageNo tool definition changes recorded. A server's first observation is its baseline; later probes record what changes.
Checks run on what our credential-free, read-only probes observe; tools are never called and no code audit is performed. How it is computed.
+repository +namespace-matches-repo +website ~liveness-unmeasured ~updated-124d-ago -unpinned-packages(1)
Derived from observable signals (official registry feed and our own credential-free probes); no code audit performed. How it is computed.
| package | registry | version | runtime | secrets |
|---|---|---|---|---|
docker.io/jackgucci/biomcp:0.8.22 | oci | unpinned | docker |
No tools observed. Local packages are never executed by the registry.
Schemas: list_tools.
{
"name": "io.github.gucci10248/biomcp",
"title": "BioMCP",
"$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
"version": "0.8.22",
"packages": [
{
"transport": {
"type": "stdio"
},
"identifier": "docker.io/jackgucci/biomcp:0.8.22",
"runtimeHint": "docker",
"registryType": "oci"
}
],
"repository": {
"url": "https://github.com/gucci10248/JEFFREY",
"source": "github"
},
"websiteUrl": "https://github.com/gucci10248/JEFFREY",
"description": "50+ biomedical data sources in one MCP server — PubMed, ClinVar, gnomAD, KEGG, and more"
}