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8 clients · secrets stay placeholders

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{
  "mcpServers": {
    "pyeuropepmc": {
      "command": "uvx",
      "args": [
        "pyeuropepmc==3.8.0",
        "mcp"
      ],
      "env": {
        "PYEUROPEPMC_MCP_LOG_LEVEL": "INFO",
        "SEMANTIC_SCHOLAR_API_KEY": "${SEMANTIC_SCHOLAR_API_KEY}",
        "OPENAI_API_KEY": "${OPENAI_API_KEY}",
        "OPENAI_MODEL": "gpt-4o-mini"
      }
    }
  }
}

claude mcp add pyeuropepmc -e "PYEUROPEPMC_MCP_LOG_LEVEL=INFO" -e "SEMANTIC_SCHOLAR_API_KEY=${SEMANTIC_SCHOLAR_API_KEY}" -e "OPENAI_API_KEY=${OPENAI_API_KEY}" -e "OPENAI_MODEL=gpt-4o-mini" -- uvx pyeuropepmc==3.8.0 mcp

[mcp_servers.pyeuropepmc]
command = "uvx"
args = ["pyeuropepmc==3.8.0", "mcp"]
env = { "PYEUROPEPMC_MCP_LOG_LEVEL" = "INFO", "SEMANTIC_SCHOLAR_API_KEY" = "${SEMANTIC_SCHOLAR_API_KEY}", "OPENAI_API_KEY" = "${OPENAI_API_KEY}", "OPENAI_MODEL" = "gpt-4o-mini" }

{
  "$schema": "https://opencode.ai/config.json",
  "mcp": {
    "pyeuropepmc": {
      "type": "local",
      "command": [
        "uvx",
        "pyeuropepmc==3.8.0",
        "mcp"
      ],
      "enabled": true,
      "environment": {
        "PYEUROPEPMC_MCP_LOG_LEVEL": "INFO",
        "SEMANTIC_SCHOLAR_API_KEY": "{env:SEMANTIC_SCHOLAR_API_KEY}",
        "OPENAI_API_KEY": "{env:OPENAI_API_KEY}",
        "OPENAI_MODEL": "gpt-4o-mini"
      }
    }
  }
}

{
  "mcpServers": {
    "pyeuropepmc": {
      "command": "uvx",
      "args": [
        "pyeuropepmc==3.8.0",
        "mcp"
      ],
      "env": {
        "PYEUROPEPMC_MCP_LOG_LEVEL": "INFO",
        "SEMANTIC_SCHOLAR_API_KEY": "${SEMANTIC_SCHOLAR_API_KEY}",
        "OPENAI_API_KEY": "${OPENAI_API_KEY}",
        "OPENAI_MODEL": "gpt-4o-mini"
      }
    }
  },
  "deeplink": "cursor://anysphere.cursor-deeplink/mcp/install?name=pyeuropepmc&config=eyJjb21tYW5kIjoidXZ4IiwiYXJncyI6WyJweWV1cm9wZXBtYz09My44LjAiLCJtY3AiXSwiZW52Ijp7IlBZRVVST1BFUE1DX01DUF9MT0dfTEVWRUwiOiJJTkZPIiwiU0VNQU5USUNfU0NIT0xBUl9BUElfS0VZIjoiJHtTRU1BTlRJQ19TQ0hPTEFSX0FQSV9LRVl9IiwiT1BFTkFJX0FQSV9LRVkiOiIke09QRU5BSV9BUElfS0VZfSIsIk9QRU5BSV9NT0RFTCI6ImdwdC00by1taW5pIn19"
}

{
  "servers": {
    "pyeuropepmc": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "pyeuropepmc==3.8.0",
        "mcp"
      ],
      "env": {
        "PYEUROPEPMC_MCP_LOG_LEVEL": "INFO",
        "SEMANTIC_SCHOLAR_API_KEY": "${SEMANTIC_SCHOLAR_API_KEY}",
        "OPENAI_API_KEY": "${OPENAI_API_KEY}",
        "OPENAI_MODEL": "gpt-4o-mini"
      }
    }
  }
}

{
  "mcpServers": {
    "pyeuropepmc": {
      "command": "uvx",
      "args": [
        "pyeuropepmc==3.8.0",
        "mcp"
      ],
      "env": {
        "PYEUROPEPMC_MCP_LOG_LEVEL": "INFO",
        "SEMANTIC_SCHOLAR_API_KEY": "${SEMANTIC_SCHOLAR_API_KEY}",
        "OPENAI_API_KEY": "${OPENAI_API_KEY}",
        "OPENAI_MODEL": "gpt-4o-mini"
      }
    }
  }
}

extensions:
  "pyeuropepmc":
    enabled: true
    name: "pyeuropepmc"
    type: stdio
    cmd: "uvx"
    args:
      - "pyeuropepmc==3.8.0"
      - "mcp"
    envs:
      "PYEUROPEPMC_MCP_LOG_LEVEL": "INFO"
      "SEMANTIC_SCHOLAR_API_KEY": "${SEMANTIC_SCHOLAR_API_KEY}"
      "OPENAI_API_KEY": "${OPENAI_API_KEY}"
      "OPENAI_MODEL": "gpt-4o-mini"
    timeout: 300

Placeholders to fill from your own secret store: ${SEMANTIC_SCHOLAR_API_KEY}, ${OPENAI_API_KEY}. The registry never accepts secret values.

This is a local package: the command runs on your machine.

Quality – / 100not scored

Not scored: fewer than three checks apply, usually because no remote answered a credential-free probe or the server is a local package.

protocoln/a · weight 25

n/a
protocol.modern, protocol.stateless, protocol.transport, protocol.list_ttlno remote answered a protocol handshake (not probed yet, unreachable, or local-only)

authorizationn/a · weight 15

n/a
auth.prm, auth.as_metadata, auth.cimdno remote uses OAuth
n/a
auth.secret_in_urlno templated URL

tool hygienen/a · weight 30

n/a
tools.descriptions, tools.description_length, tools.schemas, tools.annotations, tools.directory_hints, tools.token_cost, tools.api_dumptool list unknown (behind auth, not probed, or empty)

stabilityn/a · weight 15

n/a
stability.changes, stability.rug_pulltool list unknown

dependenciesn/a · weight 15

n/a
deps.known_vulns, deps.mcp_sdk_version, deps.resolvabledependencies not resolved yet

Tool list unknown · checked 2026-10-20 15:57 UTC

Tool changes

No tool definition changes recorded. A server's first observation is its baseline; later probes record what changes.

Checks run on what our credential-free, read-only probes observe; tools are never called and no code audit is performed. How it is computed.

Trust 96 / 100

provenance90

livenessn/a

freshness100

hygiene100

+repository +namespace-matches-repo +website ~liveness-unmeasured +updated-1d-ago

Derived from observable signals (official registry feed and our own credential-free probes); no code audit performed. How it is computed.

Dependencies

[email protected] PyPInot resolved yet; dependencies are read once a day

Dependency graphs from deps.dev; advisories from OSV.dev, including the GitHub Advisory Database and the PyPI Advisory Database; all CC BY 4.0. The graph is what a clean install of this version resolves today; nothing was installed or run. How it is checked.

Endpoints

package	registry	version	runtime	secrets
`pyeuropepmc`	pypi	3.8.0	uvx	`SEMANTIC_SCHOLAR_API_KEY`, `OPENAI_API_KEY`

Tools (0)

No tools observed. Local packages are never executed by the registry.

Schemas: list_tools.

Similar MCP servers

Official server.json

{
  "name": "io.github.JonasHeinickeBio/pyeuropepmc",
  "title": "PyEuropePMC",
  "$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
  "version": "3.8.0",
  "packages": [
    {
      "version": "3.8.0",
      "transport": {
        "type": "stdio"
      },
      "identifier": "pyeuropepmc",
      "runtimeHint": "uvx",
      "registryType": "pypi",
      "registryBaseUrl": "https://pypi.org",
      "packageArguments": [
        {
          "type": "positional",
          "value": "mcp",
          "valueHint": "command"
        }
      ],
      "environmentVariables": [
        {
          "name": "PYEUROPEPMC_MCP_LOG_LEVEL",
          "format": "string",
          "choices": [
            "DEBUG",
            "INFO",
            "WARNING",
            "ERROR"
          ],
          "default": "INFO",
          "description": "Log level, written to stderr: DEBUG, INFO, WARNING or ERROR."
        },
        {
          "name": "SEMANTIC_SCHOLAR_API_KEY",
          "format": "string",
          "isSecret": true,
          "description": "Optional. Raises the Semantic Scholar rate limit used by citation_snowball and the semantic_scholar source of unified_search; without it requests are throttled and may get HTTP 429."
        },
        {
          "name": "OPENAI_API_KEY",
          "format": "string",
          "isSecret": true,
          "description": "Optional. Enables the LLM-powered tools (analyze_citations, literature_review, paper_screening, ...) with any OpenAI-compatible API. Needs the agentic extra."
        },
        {
          "name": "OPENAI_BASE_URL",
          "format": "string",
          "description": "Optional. Base URL of an OpenAI-compatible API for the LLM tools."
        },
        {
          "name": "OPENAI_MODEL",
          "format": "string",
          "default": "gpt-4o-mini",
          "description": "Optional. Model for the LLM tools."
        },
        {
          "name": "UNPAYWALL_EMAIL",
          "format": "string",
          "description": "Optional. Your contact e-mail address, sent with each Unpaywall request (their terms ask for one). Needed by the find_open_access tool only; there is no default."
        }
      ]
    }
  ],
  "repository": {
    "id": "999512652",
    "url": "https://github.com/JonasHeinickeBio/pyEuropePMC",
    "source": "github"
  },
  "websiteUrl": "https://jonasheinickebio.github.io/pyEuropePMC/",
  "description": "Europe PMC search, full text, annotations, data links, batch lookups and export for AI agents"
}