claidex_capabilities | Return the Claidex MCP feature map, configured storage/model providers, safety controls, resources, prompts, and tool counts. |
claidex_claim_risk_matrix | Search claims and summarize MRS bands, trial phases, failure archetypes, and high-risk programs for rapid diligence. |
claidex_health_snapshot | Return Sentinel metrics, coverage, graph counts, recent automation runs, MRS bands, and preprint-watch summaries. |
claidex_research_prompt | Compose a rigorous, reusable investigation prompt that tells an MCP client which Claidex tools and resources to use. |
claidex_tool_catalog | Return the complete MCP tool catalog, optionally including full input schemas and filtering native versus agent-backed tools. |
consult_specialist_model | Ask a specialist Gateway model for code, database/tool-calling, statistics, literature, preprint, or mechanistic synthesis support. Use for hard subproblems, second opinions, code generation/review, or complex synthesis. |
fetch | Fetch a specific result returned by search. This compatibility tool supports OpenAI and ChatGPT remote MCP retrieval flows. |
fetch_research_url | Fetch a public HTTPS research URL, JSON API response, package metadata endpoint, documentation page, or dataset preview. Blocks private/internal hosts and truncates large responses. |
get_claim_content | Retrieve the complete text content of a specific Claidex Claim by its slug. Use this when you need to read the full post-mortem analysis, including hypothesis, failure mechanism, and prevention analysis. |
query_chembl | Look up a drug or compound in ChEMBL. Returns mechanism of action, primary target, ChEMBL ID, max development phase, molecular type, and synonyms. |
query_clinicaltrials | Search ClinicalTrials.gov for clinical trials. Can search by drug name, condition, target, or NCT ID. Returns trial status, phase, sponsor, primary endpoints, and why_stopped if terminated. |
query_failure_graph | Query the Claidex failure graph for a specific gene target. Returns the Mechanism Risk Score (MRS), failure counts by phase and archetype, and all related claim slugs. |
query_openfda | Query the FDA FAERS database for adverse event signals for a drug. Returns top adverse event terms, serious case count, and death count. |
query_opentargets | Query Open Targets for target-disease association evidence. Returns genetic evidence score, clinical evidence, known drugs, tractability, and safety liabilities for a gene-disease pair. |
query_package_registry | Look up package metadata from npm or PyPI before recommending code, analysis packages, API clients, or dataset tooling. |
rank_documents_by_embedding | Embed a query and candidate documents, then rank documents by cosine similarity. Use for semantic matching, retrieval checks, clustering triage, and lightweight RAG over user-provided passages. |
rerank_documents | Rerank candidate documents/passages against a query using a dedicated reranking model. Use after retrieval/search when exact relevance ordering matters. |
run_computation | Evaluate deterministic mathematical expressions with optional variables. Use for algebra, matrices, vectors, transformations, descriptive numerical checks, and reproducible calculations. Does not execute arbitrary JavaScript or install packages. |
run_statistical_analysis | Run a statistical analysis computation. Supports: Wilson confidence intervals, binomial proportions, phase transition success rates, power calculations, Bayesian posterior estimates, descriptive statistics, and two-proportion comparisons. Returns computed values, interpretation, and LaTeX formula. |
search | Search Claidex failure claims and preprint flags. This compatibility tool returns citation-ready results for OpenAI and ChatGPT remote MCP flows. |
search_claims | Search the Claidex failure database for post-mortems matching a drug name, gene target, disease, failure archetype, or sponsor. Returns matching claims with title, slug, drug, target, disease, phase, failure archetype, Open Targets score, and MRS score. |
search_preprint_flags | Search the Claidex Preprint Watch database for bioRxiv preprints flagged as contradicting the clinical failure record. Search by target gene, disease, or preprint title. |
search_pubmed | Search PubMed for biomedical literature. Returns title, authors, journal, year, DOI, abstract, and PMID for each result. |
web_search | Search the web for recent news, investor commentary, analyst notes, press releases, and conference coverage about drugs, clinical trials, or biomedical mechanisms. |
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