# io.github.mims-harvard/tooluniverse

> 2,700+ scientific tools for AI scientists: life science, research, literature, and more.

- name: io.github.mims-harvard/tooluniverse
- version: 1.5.7
- connection class: L0 (run_local_package)
- trust: 96/100
- quality: –/100 (not scored)
- owner: not claimed
- descriptor: https://api.protogrid.dev/v1/servers/io.github.mims-harvard%2Ftooluniverse
- tools: https://api.protogrid.dev/v1/servers/io.github.mims-harvard%2Ftooluniverse/tools

**Runs on your machine: something must execute the package.** Only local packages are published (npm, PyPI, OCI, …). The registry never executes them, so tools are unknown until you run it.

## Connection (mcpServers)

```json
{
  "mcpServers": {
    "tooluniverse": {
      "command": "uvx",
      "args": [
        "tooluniverse==1.5.7",
        "tooluniverse-smcp-stdio",
        "--compact-mode",
        "--categories"
      ],
      "env": {
        "OPENAI_API_KEY": "${OPENAI_API_KEY}",
        "ANTHROPIC_API_KEY": "${ANTHROPIC_API_KEY}",
        "GEMINI_API_KEY": "${GEMINI_API_KEY}",
        "OPENROUTER_API_KEY": "${OPENROUTER_API_KEY}",
        "AZURE_OPENAI_API_KEY": "${AZURE_OPENAI_API_KEY}",
        "HF_TOKEN": "${HF_TOKEN}",
        "NCBI_API_KEY": "${NCBI_API_KEY}",
        "SEMANTIC_SCHOLAR_API_KEY": "${SEMANTIC_SCHOLAR_API_KEY}",
        "BIOGRID_API_KEY": "${BIOGRID_API_KEY}",
        "DISGENET_API_KEY": "${DISGENET_API_KEY}",
        "OMIM_API_KEY": "${OMIM_API_KEY}",
        "ONCOKB_API_TOKEN": "${ONCOKB_API_TOKEN}",
        "NVIDIA_API_KEY": "${NVIDIA_API_KEY}",
        "USPTO_API_KEY": "${USPTO_API_KEY}",
        "UMLS_API_KEY": "${UMLS_API_KEY}",
        "BRENDA_PASSWORD": "${BRENDA_PASSWORD}"
      }
    }
  }
}
```

Placeholders to fill: `${OPENAI_API_KEY}`, `${ANTHROPIC_API_KEY}`, `${GEMINI_API_KEY}`, `${OPENROUTER_API_KEY}`, `${AZURE_OPENAI_API_KEY}`, `${HF_TOKEN}`, `${NCBI_API_KEY}`, `${SEMANTIC_SCHOLAR_API_KEY}`, `${BIOGRID_API_KEY}`, `${DISGENET_API_KEY}`, `${OMIM_API_KEY}`, `${ONCOKB_API_TOKEN}`, `${NVIDIA_API_KEY}`, `${USPTO_API_KEY}`, `${UMLS_API_KEY}`, `${BRENDA_PASSWORD}`.

## Trust

- hygiene: 100
- liveness: n/a
- freshness: 100
- provenance: 90
- drivers: +repository +namespace-matches-repo +website ~liveness-unmeasured +updated-7d-ago
- Derived from observable signals (official registry feed and our own credential-free probes); no code audit performed.

## Quality –/100 (not scored)

Not scored: fewer than three checks apply, usually because no remote answered a credential-free probe or the server is a local package.

### protocol: n/a (weight 25)

- n/a `protocol.modern`, `protocol.stateless`, `protocol.transport`, `protocol.list_ttl`: no remote answered a protocol handshake (not probed yet, unreachable, or local-only)

### authorization: n/a (weight 15)

- n/a `auth.prm`, `auth.as_metadata`, `auth.cimd`: no remote uses OAuth
- n/a `auth.secret_in_url`: no templated URL

### tool hygiene: n/a (weight 30)

- n/a `tools.descriptions`, `tools.description_length`, `tools.schemas`, `tools.annotations`, `tools.directory_hints`, `tools.token_cost`, `tools.api_dump`: tool list unknown (behind auth, not probed, or empty)

### stability: n/a (weight 15)

- n/a `stability.changes`, `stability.rug_pull`: tool list unknown

### dependencies: n/a (weight 15)

- n/a `deps.known_vulns`, `deps.mcp_sdk_version`, `deps.resolvable`: deps.dev does not know tooluniverse@1.5.7

- tools: unknown
- badge: [![protogrid quality](https://protogrid.dev/badge/io.github.mims-harvard/tooluniverse.svg)](https://protogrid.dev/servers/io.github.mims-harvard/tooluniverse)
- Checks run on what our credential-free, read-only probes observe; tools are never called and no code audit is performed.

### Tool changes

_No tool definition changes recorded._

## Dependencies

- pypi tooluniverse@1.5.7: unknown

Dependency graphs from deps.dev; advisories from OSV.dev, including the GitHub Advisory Database and the PyPI Advisory Database; all CC BY 4.0.

## Remotes

_none_

## Packages

- pypi tooluniverse@1.5.7 secrets: OPENAI_API_KEY, ANTHROPIC_API_KEY, GEMINI_API_KEY, OPENROUTER_API_KEY, AZURE_OPENAI_API_KEY, HF_TOKEN, NCBI_API_KEY, SEMANTIC_SCHOLAR_API_KEY, BIOGRID_API_KEY, DISGENET_API_KEY, OMIM_API_KEY, ONCOKB_API_TOKEN, NVIDIA_API_KEY, USPTO_API_KEY, UMLS_API_KEY, BRENDA_PASSWORD

## Tools (0)

_none observed_